X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimerapintailcommand.h;fp=chimerapintailcommand.h;h=d2b2e03a3196d61cf7036ff879f1a18bec741ae6;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hp=9082204bf80af5ccb83cba072078ef8b276f6e3a;hpb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2;p=mothur.git

diff --git a/chimerapintailcommand.h b/chimerapintailcommand.h
index 9082204..d2b2e03 100644
--- a/chimerapintailcommand.h
+++ b/chimerapintailcommand.h
@@ -22,7 +22,12 @@ class ChimeraPintailCommand : public Command {
 public:
 
 	ChimeraPintailCommand(string);
+	ChimeraPintailCommand();
 	~ChimeraPintailCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -49,6 +54,7 @@ private:
 	int processors, window, increment, numSeqs, templateSeqsLength;
 	Chimera* chimera;
 	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
 	vector<string> fastaFileNames;