X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimerapintailcommand.h;fp=chimerapintailcommand.h;h=b0dcceb4d766e693a9d9c32819352690740c9946;hb=52ea8f3a52c05331b9bd7519ae0b518bda233d05;hp=0ddfc1c6229758991e74b0def36a778182a74da6;hpb=14bf280629e8e52ff1ea3c9da6f7aae1e28f9acb;p=mothur.git

diff --git a/chimerapintailcommand.h b/chimerapintailcommand.h
index 0ddfc1c..b0dcceb 100644
--- a/chimerapintailcommand.h
+++ b/chimerapintailcommand.h
@@ -44,9 +44,11 @@ private:
 	#endif
 
 	bool abort, filter, MPIWroteAccnos;
-	string fastafile, templatefile, consfile, quanfile, maskfile, outputDir;
+	string fastafile, templatefile, consfile, quanfile, maskfile, outputDir, inputDir;
 	int processors, window, increment, numSeqs, templateSeqsLength;
 	Chimera* chimera;
+	vector<string> outputNames;
+	vector<string> fastaFileNames;
 	
 	
 };