X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimerapintailcommand.h;fp=chimerapintailcommand.h;h=acb078173501a7d7cf48cc88f5c305e12eccc225;hb=a44542a3c740cf957cff72ac71742f2fe48b0eaf;hp=8dec0ac7d1ec75c4f58e1aa87d03a93bd0861aa8;hpb=f2408a11ad53c148e3a3329018ca7d04b567f11d;p=mothur.git diff --git a/chimerapintailcommand.h b/chimerapintailcommand.h index 8dec0ac..acb0781 100644 --- a/chimerapintailcommand.h +++ b/chimerapintailcommand.h @@ -30,7 +30,8 @@ public: string getCommandCategory() { return "Sequence Processing"; } string getHelpString(); string getCitation() { return "Ashelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ (2005). At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl Environ Microbiol 71: 7724-36. \nAshelford KE, Chuzhanova NA, Fry JC, Jones AJ, Weightman AJ (2006). New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras. Appl Environ Microbiol 72: 5734-41. \nhttp://www.mothur.org/wiki/Chimera.pintail"; } - + string getDescription() { return "detect chimeric sequences"; } + int execute(); void help() { m->mothurOut(getHelpString()); } private: