X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimerapintailcommand.cpp;h=adf060f485d862dc93797069a54bb58fbe25adfb;hb=89d6711c2beed6ee75fb00e5e57f1a91564d3e89;hp=62f1f2bae942f1c91ca1ee16bb21b6a4996c790e;hpb=6f4b9401f7deb8aaf0d87659298308f4138cc3b0;p=mothur.git

diff --git a/chimerapintailcommand.cpp b/chimerapintailcommand.cpp
index 62f1f2b..adf060f 100644
--- a/chimerapintailcommand.cpp
+++ b/chimerapintailcommand.cpp
@@ -254,8 +254,9 @@ int ChimeraPintailCommand::execute(){
 				
 				//figure out how many sequences you have to align
 				numSeqsPerProcessor = numSeqs / processors;
-				if(pid == (processors - 1)){	numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; 	}
 				int startIndex =  pid * numSeqsPerProcessor;
+				if(pid == (processors - 1)){	numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; 	}
+				
 			
 				//align your part
 				driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPI, outMPIAccnos, MPIPos);
@@ -274,8 +275,9 @@ int ChimeraPintailCommand::execute(){
 				
 				//figure out how many sequences you have to align
 				numSeqsPerProcessor = numSeqs / processors;
-				if(pid == (processors - 1)){	numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; 	}
 				int startIndex =  pid * numSeqsPerProcessor;
+				if(pid == (processors - 1)){	numSeqsPerProcessor = numSeqs - pid * numSeqsPerProcessor; 	}
+				
 				
 				//align your part
 				driverMPI(startIndex, numSeqsPerProcessor, inMPI, outMPI, outMPIAccnos, MPIPos);