X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraperseuscommand.cpp;h=f7dc597cf8ca514712bf06f29f2010982d6c03c9;hb=feb0fbef36b8a681efc04e9b5e3efb1647b99021;hp=842a65ee22fd54c730143cbed94f91688dba8006;hpb=037b7fccc64a5c7d5d5c23a949273a912160a400;p=mothur.git

diff --git a/chimeraperseuscommand.cpp b/chimeraperseuscommand.cpp
index 842a65e..f7dc597 100644
--- a/chimeraperseuscommand.cpp
+++ b/chimeraperseuscommand.cpp
@@ -469,10 +469,7 @@ ChimeraPerseusCommand::ChimeraPerseusCommand(string option)  {
 			m->mothurConvert(temp, beta);
             
 			temp = validParameter.validFile(parameters, "dereplicate", false);	
-			if (temp == "not found") { 
-				if (groupfile != "")    {  temp = "false";					}
-				else                    {  temp = "true"; 	}
-			}
+			if (temp == "not found") { temp = "false";			}
 			dups = m->isTrue(temp);
 		}
 	}