X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraperseuscommand.cpp;fp=chimeraperseuscommand.cpp;h=66889f145af3340d5a7fe38db4e8aa34997c2219;hb=14cddf859d97118481161bf3e85a647976020758;hp=b4e478caea6bab2c3cf3a7d13a756f95a29f2223;hpb=4b54ce99af7db8019ea907cd7c2edf789369ada9;p=mothur.git

diff --git a/chimeraperseuscommand.cpp b/chimeraperseuscommand.cpp
index b4e478c..66889f1 100644
--- a/chimeraperseuscommand.cpp
+++ b/chimeraperseuscommand.cpp
@@ -1076,6 +1076,9 @@ int ChimeraPerseusCommand::createProcessesGroups(string outputFName, string accn
 			
 		//Close all thread handles and free memory allocations.
 		for(int i=0; i < pDataArray.size(); i++){
+            if (pDataArray[i]->count != pDataArray[i]->end) {
+                m->mothurOut("[ERROR]: process " + toString(i) + " only processed " + toString(pDataArray[i]->count) + " of " + toString(pDataArray[i]->end) + " sequences assigned to it, quitting. \n"); m->control_pressed = true; 
+            }
 			num += pDataArray[i]->count;
 			CloseHandle(hThreadArray[i]);
 			delete pDataArray[i];