X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeracheckrdp.cpp;h=1840c382627f8a65ff9849919b5f95de4cf60db0;hb=fc9bc621a09de13eb76ca4f5cee930b03de43dcd;hp=e89277b12078c089688c9c1cba7f9abe734ea8bc;hpb=e0fbf58358a72f20352cf2a43922ab6b5bdf0cf8;p=mothur.git

diff --git a/chimeracheckrdp.cpp b/chimeracheckrdp.cpp
index e89277b..1840c38 100644
--- a/chimeracheckrdp.cpp
+++ b/chimeracheckrdp.cpp
@@ -283,7 +283,7 @@ void ChimeraCheckRDP::readName(string namefile) {
 		delete buffer;
 		
 		while(!iss.eof()) {
-			iss >> name; gobble(iss);
+			iss >> name; m->gobble(iss);
 			names[name] = name;
 		}
 	
@@ -292,10 +292,10 @@ void ChimeraCheckRDP::readName(string namefile) {
 	#else	
 	
 		ifstream in;
-		openInputFile(namefile, in);
+		m->openInputFile(namefile, in);
 				
 		while (!in.eof()) {
-			in >> name; gobble(in);
+			in >> name; m->gobble(in);
 			names[name] = name;
 		}
 		in.close();
@@ -432,7 +432,7 @@ void ChimeraCheckRDP::makeSVGpic(vector<sim> info) {
 		
 		string file = outputDir + querySeq->getName() + ".chimeracheck.svg";
 		ofstream outsvg;
-		openOutputFile(file, outsvg);
+		m->openOutputFile(file, outsvg);
 		
 		int width = (info.size()*5) + 150;