X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeracheckcommand.h;h=918b4e5e9bf8aa4a16a1e0ba0716e09753a29cea;hb=e0ce7cbc93d7d2fbb753ca694182db092a0ea0e7;hp=d29744ba39ba1791e27c306c7fd09f950ac15c0f;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf;p=mothur.git

diff --git a/chimeracheckcommand.h b/chimeracheckcommand.h
index d29744b..918b4e5 100644
--- a/chimeracheckcommand.h
+++ b/chimeracheckcommand.h
@@ -38,9 +38,9 @@ public:
 private:
 
 	struct linePair {
-		unsigned long int start;
-		unsigned long int end;
-		linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
+		unsigned long long start;
+		unsigned long long end;
+		linePair(unsigned long long i, unsigned long long j) : start(i), end(j) {}
 	};
 
 	vector<int> processIDS;   //processid
@@ -50,10 +50,10 @@ private:
 	int createProcesses(string, string);
 		
 	#ifdef USE_MPI
-	int driverMPI(int, int, MPI_File&, MPI_File&, vector<unsigned long int>&);
+	int driverMPI(int, int, MPI_File&, MPI_File&, vector<unsigned long long>&);
 	#endif
 
-	bool abort, svg;
+	bool abort, svg, save;
 	string fastafile, templatefile, namefile, outputDir;
 	int processors, increment, ksize, numSeqs, templateSeqsLength;
 	Chimera* chimera;