X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeracheckcommand.h;fp=chimeracheckcommand.h;h=6e81812e469772b18a737930354f1bdf943a9ef9;hb=8bc3e5b38c2317a1715f53be22fa96455868c281;hp=71e1f0cdad86dc4610a65711c57c355eb9ee2aaf;hpb=f663afa231c9bc1b5e18e0ea3bdd2b2ee784f5b2;p=mothur.git

diff --git a/chimeracheckcommand.h b/chimeracheckcommand.h
index 71e1f0c..6e81812 100644
--- a/chimeracheckcommand.h
+++ b/chimeracheckcommand.h
@@ -21,7 +21,12 @@
 class ChimeraCheckCommand : public Command {
 public:
 	ChimeraCheckCommand(string);
+	ChimeraCheckCommand();
 	~ChimeraCheckCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map<string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 	
@@ -51,6 +56,7 @@ private:
 	vector<string> fastaFileNames;
 	vector<string> nameFileNames;
 	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
 		
 };