X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeracheckcommand.cpp;h=ab079fd073ccd0463b55e909cab4d4d46e7f1bc3;hb=aca78ed4a47dff8672ea8fd93cef0dfbaf0f7495;hp=64ed9faa73e7cb72e5e307cc10e86f1a9bcfc195;hpb=d39f94cf9bceeae887b211eec862da5c9c77e10d;p=mothur.git

diff --git a/chimeracheckcommand.cpp b/chimeracheckcommand.cpp
index 64ed9fa..ab079fd 100644
--- a/chimeracheckcommand.cpp
+++ b/chimeracheckcommand.cpp
@@ -622,17 +622,17 @@ int ChimeraCheckCommand::createProcesses(string outputFileName, string filename)
 		
 		//loop through and create all the processes you want
 		while (process != processors) {
-			int pid = fork();
+			pid_t pid = fork();
 			
 			if (pid > 0) {
 				processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
 				process++;
 			}else if (pid == 0){
-				num = driver(lines[process], outputFileName + toString(getpid()) + ".temp", filename);
+				num = driver(lines[process], outputFileName + toString(m->mothurGetpid(process)) + ".temp", filename);
 				
 				//pass numSeqs to parent
 				ofstream out;
-				string tempFile = outputFileName + toString(getpid()) + ".num.temp";
+				string tempFile = outputFileName + toString(m->mothurGetpid(process)) + ".num.temp";
 				m->openOutputFile(tempFile, out);
 				out << num << endl;
 				out.close();