X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeracheckcommand.cpp;h=9f53b1753903a44b469f0766a261894cb3177476;hb=2bb9267aa4b4ecdf8488b06605cc9f3f36fa4332;hp=400a715aeedf604efb80e580f6c345677f74a430;hpb=7f0cae4f4853cc3f12bc751ee06ea31c7c97496e;p=mothur.git diff --git a/chimeracheckcommand.cpp b/chimeracheckcommand.cpp index 400a715..9f53b17 100644 --- a/chimeracheckcommand.cpp +++ b/chimeracheckcommand.cpp @@ -281,7 +281,7 @@ ChimeraCheckCommand::ChimeraCheckCommand(string option) { string temp = validParameter.validFile(parameters, "processors", false); if (temp == "not found"){ temp = m->getProcessors(); } m->setProcessors(temp); - convert(temp, processors); + m->mothurConvert(temp, processors); temp = validParameter.validFile(parameters, "save", false); if (temp == "not found"){ temp = "f"; } save = m->isTrue(temp); @@ -306,14 +306,14 @@ ChimeraCheckCommand::ChimeraCheckCommand(string option) { temp = validParameter.validFile(parameters, "ksize", false); if (temp == "not found") { temp = "7"; } - convert(temp, ksize); + m->mothurConvert(temp, ksize); temp = validParameter.validFile(parameters, "svg", false); if (temp == "not found") { temp = "F"; } svg = m->isTrue(temp); if (nameFileNames.size() != 0) { svg = true; } temp = validParameter.validFile(parameters, "increment", false); if (temp == "not found") { temp = "10"; } - convert(temp, increment); + m->mothurConvert(temp, increment); } } catch(exception& e) {