X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraccodecommand.h;h=5b8092b6f7075111c7fa8c5c58caf14ef3ebaeca;hb=a5d3e10e24e503483d8e85b54f0fd34b9308d31b;hp=2bf7a70fd159a93fcc813c3236aed97a8c18c916;hpb=a44542a3c740cf957cff72ac71742f2fe48b0eaf;p=mothur.git

diff --git a/chimeraccodecommand.h b/chimeraccodecommand.h
index 2bf7a70..5b8092b 100644
--- a/chimeraccodecommand.h
+++ b/chimeraccodecommand.h
@@ -36,9 +36,9 @@ public:
 		
 private:
 	struct linePair {
-		unsigned long int start;
-		unsigned long int end;
-		linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
+		unsigned long long start;
+		unsigned long long end;
+		linePair(unsigned long long i, unsigned long long j) : start(i), end(j) {}
 	};
 	vector<int> processIDS;   //processid
 	vector<linePair*> lines;
@@ -47,10 +47,10 @@ private:
 	int createProcesses(string, string, string);
 	
 	#ifdef USE_MPI
-	int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector<unsigned long int>&);
+	int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, vector<unsigned long long>&);
 	#endif
 
-	bool abort, filter;
+	bool abort, filter, save;
 	string fastafile, templatefile, outputDir, maskfile;
 	int processors, window, numwanted, numSeqs, templateSeqsLength;
 	Chimera* chimera;