X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimeraccodecommand.cpp;fp=chimeraccodecommand.cpp;h=7468011ee79e22c9f796733cb9db651f7e5e53f1;hb=7f0cae4f4853cc3f12bc751ee06ea31c7c97496e;hp=321ae77cf743420284e4dfac274d9c88b9b4557f;hpb=113672689e4c84383a0304bfd21fb9574a77866c;p=mothur.git

diff --git a/chimeraccodecommand.cpp b/chimeraccodecommand.cpp
index 321ae77..7468011 100644
--- a/chimeraccodecommand.cpp
+++ b/chimeraccodecommand.cpp
@@ -390,14 +390,16 @@ int ChimeraCcodeCommand::execute(){
 
 			outHeader.close();
 			
-			vector<unsigned long long> positions = m->divideFile(fastaFileNames[s], processors);
-				
-			for (int i = 0; i < (positions.size()-1); i++) {
-				lines.push_back(new linePair(positions[i], positions[(i+1)]));
-			}	
+			
 			
 			//break up file
 			#if defined (__APPLE__) || (__MACH__) || (linux) || (__linux)
+				vector<unsigned long long> positions = m->divideFile(fastaFileNames[s], processors);
+			
+				for (int i = 0; i < (positions.size()-1); i++) {
+					lines.push_back(new linePair(positions[i], positions[(i+1)]));
+				}	
+			
 				if(processors == 1){
 										
 					numSeqs = driver(lines[0], outputFileName, fastaFileNames[s], accnosFileName);
@@ -436,6 +438,7 @@ int ChimeraCcodeCommand::execute(){
 				}
 
 			#else
+				lines.push_back(new linePair(0, 1000));
 				numSeqs = driver(lines[0], outputFileName, fastaFileNames[s], accnosFileName);
 				
 				if (m->control_pressed) { m->mothurRemove(outputFileName); m->mothurRemove(tempHeader); m->mothurRemove(accnosFileName); for (int j = 0; j < outputNames.size(); j++) {	m->mothurRemove(outputNames[j]);	} for (int i = 0; i < lines.size(); i++) {  delete lines[i];  } outputTypes.clear();  lines.clear(); delete chimera; return 0; }