X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=chimerabellerophoncommand.h;h=6e1ae50794f23d92c75d0224011251e385ae8f43;hb=1d5962b46d9e72a2b855b4176d1c47df9a163fac;hp=e450b52bbe3326f5677cd914f0fa19c9c7970962;hpb=fdc1f6eaf544f695fc1511f24bddd7e6069c33ba;p=mothur.git

diff --git a/chimerabellerophoncommand.h b/chimerabellerophoncommand.h
index e450b52..6e1ae50 100644
--- a/chimerabellerophoncommand.h
+++ b/chimerabellerophoncommand.h
@@ -20,7 +20,12 @@
 class ChimeraBellerophonCommand : public Command {
 public:
 	ChimeraBellerophonCommand(string);
+	ChimeraBellerophonCommand();
 	~ChimeraBellerophonCommand();
+	vector<string> getRequiredParameters();
+	vector<string> getValidParameters();
+	vector<string> getRequiredFiles();
+	map< string, vector<string> > getOutputFiles() { return outputTypes; }
 	int execute();
 	void help();
 		
@@ -30,6 +35,9 @@ private:
 	string fastafile, outputDir;
 	int processors, window, increment, numSeqs;
 	Chimera* chimera;
+	vector<string> outputNames;
+	map<string, vector<string> > outputTypes;
+	vector<string> fastaFileNames;
 };
 
 /***********************************************************/