X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=catchallcommand.h;h=d1b8a2a8dfabf300d4d6cb7591e043e2ea48b113;hb=28bcfc4a41b8b82f66636587e0d4d355d07cbdd1;hp=d32989bea50e014c800b84c0de35e72b6e5c859b;hpb=8f7f4fc08b8c70d9ef0f79607813dba4e926e102;p=mothur.git diff --git a/catchallcommand.h b/catchallcommand.h index d32989b..d1b8a2a 100644 --- a/catchallcommand.h +++ b/catchallcommand.h @@ -31,9 +31,11 @@ public: vector setParameters(); string getCommandName() { return "catchall"; } string getCommandCategory() { return "OTU-Based Approaches"; } + string getOutputFileNameTag(string, string); string getHelpString(); string getCitation() { return "Bunge, J. (2011). Estimating the number of species with CatchAll. Forthcoming in Proceedings of the Pacific Symposium on Biocomputing 2011.\nhttp://www.northeastern.edu/catchall/index.html http://www.mothur.org/wiki/Catchall"; } - + string getDescription() { return "estimate number of species"; } + int execute(); void help() { m->mothurOut(getHelpString()); }