X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_test%2Ftest_all;h=e94395f84dbdc2324b8f5c09d080dfd1142fa706;hb=041e3704a12bb721c4dd3ee3f28bf286c5654e33;hp=061bec3f5bc69b2df1b18b7313b6d7e86c1f9a1d;hpb=bba949ceabb0a366245520982ad01db7c9fc62d3;p=biopieces.git

diff --git a/bp_test/test_all b/bp_test/test_all
index 061bec3..e94395f 100755
--- a/bp_test/test_all
+++ b/bp_test/test_all
@@ -1,8 +1,39 @@
-#!/usr/bin/env sh
+#!/bin/bash
 
-source "lib/test.sh"
+source "$BP_DIR/bp_test/lib/test.sh"
 
-rm $log_file
+if [ -f $log_file ]; then
+    rm $log_file
+fi
+
+test_perl
+test_perl_module "Inline"
+test_perl_module "JSON::XS"
+test_perl_module "SVG"
+test_perl_module "Bit::Vector"
+test_perl_module "Time::HiRes"
+test_ruby
+test_ruby_gem "gnuplot"
+test_ruby_gem "narray"
+test_ruby_gem "RubyInline"
+test_ruby_gem "terminal-table"
+test_aux_program "blastall"
+test_aux_program "blat"
+test_aux_program "bwa"
+test_aux_program "bowtie"
+test_aux_program "formatdb"
+test_aux_program "gnuplot"
+test_aux_program "idba"
+test_aux_program "muscle"
+test_aux_program "mummer"
+test_aux_program "mysql"
+test_aux_program "prodigal"
+test_aux_program "Ray"
+test_aux_program "scan_for_matches"
+test_aux_program "usearch"
+test_aux_program "velveth"
+test_aux_program "velvetg"
+test_aux_program "vmatch"
 
 count=0
 time0=`date +%s`
@@ -17,13 +48,15 @@ time=$[ $time1 - $time0 ]
 
 test_count=`cat $log_file | wc -l | sed "s/ //g"`
 test_ok=`grep -c "OK" $log_file`
+test_fail=`grep -c "FAIL" $log_file`
+test_warn=`grep -c "WARNING" $log_file`
 
-test_fail=$[ $test_count - $test_ok ]
+report="Biopieces tested: $count  Tests run: $test_count  OK: $test_ok  FAIL: $test_fail  WARNING: $test_warn  Time: $time secs"
 
-report="Biopieces tested: $count   Tests run: $test_count   OK: $test_ok   FAIL: $test_fail   Time: $time secs"
-
-if [ $test_fail = 0 ]; then
-    echo_green "$report"
-else
+if (($test_fail > 0)); then
     echo_red "$report"
+elif (($test_warn > 0)); then
+    echo_yellow "$report"
+else
+    echo_green "$report"
 fi