X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_test%2Ftest%2Ftest_find_orfs;fp=bp_test%2Ftest%2Ftest_find_orfs;h=fe378bd6103e5f09b574480f61d408903beef1ea;hb=9052a73697c99a1f0634e2d1f2cf2932f8288810;hp=0000000000000000000000000000000000000000;hpb=817ff2f0a4be01f45972e06a3228745d0ee456ca;p=biopieces.git

diff --git a/bp_test/test/test_find_orfs b/bp_test/test/test_find_orfs
new file mode 100755
index 0000000..fe378bd
--- /dev/null
+++ b/bp_test/test/test_find_orfs
@@ -0,0 +1,27 @@
+#!/bin/bash
+
+source "$BP_DIR/bp_test/lib/test.sh"
+
+run "$bp -I $in -O $tmp"
+assert_no_diff $tmp $out.1
+clean
+
+run "$bp -I $in -s 'GTG' -O $tmp"
+assert_no_diff $tmp $out.2
+clean
+
+run "$bp -I $in -S 'TAA' -O $tmp"
+assert_no_diff $tmp $out.3
+clean
+
+run "$bp -I $in -m 700 -O $tmp"
+assert_no_diff $tmp $out.4
+clean
+
+run "$bp -I $in -M 100 -O $tmp"
+assert_no_diff $tmp $out.5
+clean
+
+run "$bp -I $in -n -O $tmp"
+assert_no_diff $tmp $out.6
+clean