X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_scripts%2Ftrim_seq.sh;h=7866c740fcc72f75e21a704d0f472c5508f473a2;hb=b02116e3abb92692edee993518047b6853da22d9;hp=60839aa59ac2cbd17de087acbaaf3265f916f878;hpb=ab6ea2758b9d201e48a47b2ecf62ca0ad771d308;p=biopieces.git diff --git a/bp_scripts/trim_seq.sh b/bp_scripts/trim_seq.sh index 60839aa..7866c74 100755 --- a/bp_scripts/trim_seq.sh +++ b/bp_scripts/trim_seq.sh @@ -5,11 +5,11 @@ pid=$$ -plot_scores -t post -o trim_seq_scores_pretrim.$pid.ps | -plot_lendist -k SEQ_LEN -t post -o trim_seq_lendist_pretrim.$pid.ps | +plot_scores -t post -o 00_trim_seq_scores_pretrim.$pid.ps | +plot_lendist -k SEQ_LEN -t post -o 01_trim_seq_lendist_pretrim.$pid.ps | trim_seq | grab -e "SEQ_LEN>=30" | mean_scores -l | grab -e "SCORES_LOCAL_MEAN>=15" | -plot_scores -t post -o trim_seq_scores_posttrim.$pid.ps | -plot_lendist -k SEQ_LEN -t post -o trim_seq_lendist_posttrim.$pid.ps +plot_scores -t post -o 02_trim_seq_scores_posttrim.$pid.ps | +plot_lendist -k SEQ_LEN -t post -o 03_trim_seq_lendist_posttrim.$pid.ps