X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_scripts%2FQA_Illumina_report.rb;h=6e0ba0a4c10c9ec695daf0c81dd1fb0c5f591c6c;hb=381ac0da9f2a23e39e5fe3708b120cea3530b8d6;hp=74d720a2c0a2e0334c8a94e799ec31d28e65af1e;hpb=9c6de44e5d76b8f6076e28a0e25c774afdddb780;p=biopieces.git

diff --git a/bp_scripts/QA_Illumina_report.rb b/bp_scripts/QA_Illumina_report.rb
index 74d720a..6e0ba0a 100755
--- a/bp_scripts/QA_Illumina_report.rb
+++ b/bp_scripts/QA_Illumina_report.rb
@@ -66,7 +66,7 @@ scores_bin_file                = File.join(tmpdir, 'scores_bin.png')
 STDERR.puts "Analyzing sequences ... "
 
 system(
-  "read_fastq -i #{seq_file} |
+  "read_fastq -e base_33 -i #{seq_file} |
    progress_meter |
    analyze_vals -k SEQ -o #{analyze_vals_file} |
    trim_seq -l 3 -m 25 |