X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_scripts%2FQA_Illumina_report.rb;h=420294c08662e09d34fa0fa79b16450a3583653a;hb=9933aef4da5890fd137e28543c3f405490ee2892;hp=74d720a2c0a2e0334c8a94e799ec31d28e65af1e;hpb=5ced0e7864e9645e56c6c618da1f04e0a4d667fc;p=biopieces.git

diff --git a/bp_scripts/QA_Illumina_report.rb b/bp_scripts/QA_Illumina_report.rb
index 74d720a..420294c 100755
--- a/bp_scripts/QA_Illumina_report.rb
+++ b/bp_scripts/QA_Illumina_report.rb
@@ -66,7 +66,7 @@ scores_bin_file                = File.join(tmpdir, 'scores_bin.png')
 STDERR.puts "Analyzing sequences ... "
 
 system(
-  "read_fastq -i #{seq_file} |
+  "read_fastq -e illumina1.8 -i #{seq_file} |
    progress_meter |
    analyze_vals -k SEQ -o #{analyze_vals_file} |
    trim_seq -l 3 -m 25 |