X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_scripts%2FQA_454_report.rb;h=4c3f7f55464b62f3398d0050c3505c917e606b4e;hb=4f9f6c91b6bb0998091f6d91ab052ca9f587277a;hp=12397892fd0dd179cf19c3ef297fb04b20a05a19;hpb=187c65e774da277ab41729ca06344cb24fe8e60a;p=biopieces.git

diff --git a/bp_scripts/QA_454_report.rb b/bp_scripts/QA_454_report.rb
index 1239789..4c3f7f5 100755
--- a/bp_scripts/QA_454_report.rb
+++ b/bp_scripts/QA_454_report.rb
@@ -67,7 +67,7 @@ class Report
         "read_sff -i #{@sff_file} |
          progress_meter |
          analyze_seq |
-         analyze_vals -k GC%,HARD_MASK%,SOFT_MASK% |
+         analyze_vals -k SEQ,GC%,HARD_MASK%,SOFT_MASK% |
          write_tab -o #{@anal_file} -x"
        )
       STDERR.puts "done.\n"
@@ -80,7 +80,7 @@ class Report
           fields = line.split("\t")
 
           case fields.first
-          when "SEQ"        then @count, @min, @max, @sum, @mean = fields[2], fields[3], fields[4], fields[5], fields[6]
+          when "SEQ"        then @count, @min, @max, @bases, @mean = fields[2 .. 6]
           when "GC%"        then @gc   = fields[6]
           when "HARD_MASK%" then @hard = fields[6]
           when "SOFT_MASK%" then @soft = fields[6]