X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_conf%2Fbashrc.template;fp=bp_conf%2Fbashrc.template;h=0000000000000000000000000000000000000000;hb=f01f27d084299429c046851eced0938ef9329205;hp=c7557d92cf49b79a5ba1aa51198a0dfaa2c3dfd7;hpb=abcfd5c694b78fc14e5589ac0dc8dbc0a3c6e59c;p=biopieces.git diff --git a/bp_conf/bashrc.template b/bp_conf/bashrc.template deleted file mode 100644 index c7557d9..0000000 --- a/bp_conf/bashrc.template +++ /dev/null @@ -1,32 +0,0 @@ -### >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< - -### Stuff that enables biopieces. - -### BP_DIR, BP_DATA and BP_TMP should all be set in ~/.bashrc -### see http://code.google.com/p/biopieces/wiki/Installation - -### The below bin directory should hold biopiece executables - regardsles of programming language. - -export BP_BIN="$BP_DIR/bp_bin" # Directory with biopiece executables. - -### The following directories hold the biopiece libraries, modules, gems, etc - one per programming language. - -export BP_PERL="$BP_DIR/code_perl" # Direcotry with Perl code. -export BP_C="$BP_DIR/code_c" # Direcotry with c code. -export BP_PYTHON="$BP_DIR/code_python" # Direcotry with Pyton code. -export BP_RUBY="$BP_DIR/code_ruby" # Direcotry with Ruby code. - -### Here we add the biopiece variable to the existing PATH and PERL5LIB variables. - -export PATH="$PATH:$BP_BIN" -export PERL5LIB="$PERL5LIB:$BP_PERL" - -### Alias allowing power scripting with biopieces. - -alias bioscript="perl -MMaasha::Biopieces=read_stream,get_record,put_record -e" - - -### >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< - - -### Martin A. Hansen, June 2008