X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fwrite_blast;h=b3f6c72180565265e34713903c184bf37e72c325;hb=5de6112b70b59420b245ce636a8b2e3c90acbe00;hp=f72f71874c0bd9391cdf313daea5926098e8be34;hpb=9854397f83abe8d5a8c614b799ef3107d3f85f80;p=biopieces.git

diff --git a/bp_bin/write_blast b/bp_bin/write_blast
index f72f718..b3f6c72 100755
--- a/bp_bin/write_blast
+++ b/bp_bin/write_blast
@@ -1,4 +1,4 @@
-#!/usr/bin/env perl -w
+#!/usr/bin/env perl
 
 # Copyright (C) 2007-2009 Martin A. Hansen.
 
@@ -26,6 +26,7 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
+use warnings;
 use strict;
 use Maasha::Fasta;
 use Maasha::Biopieces;
@@ -34,7 +35,7 @@ use Maasha::Biopieces;
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
-my ( $run_time_beg, $run_time_end, $options, $in, $out, $record, $first, $entry, $data_out );
+my ( $options, $in, $out, $record, $first, $entry, $data_out );
 
 $options = Maasha::Biopieces::parse_options(
     [
@@ -70,8 +71,11 @@ while ( $record = Maasha::Biopieces::get_record( $in ) )
 
 close $data_out;
 
+Maasha::Biopieces::close_stream( $in );
+Maasha::Biopieces::close_stream( $out );
 
-# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+
+# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> SUBROUTINES <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
 sub biopiece2blast_tab
@@ -123,19 +127,13 @@ sub biopiece2blast_tab
 
 BEGIN
 {
-    $run_time_beg = Maasha::Biopieces::run_time();
-
-    Maasha::Biopieces::log_biopiece();
+    Maasha::Biopieces::status_set();
 }
 
+
 END
 {
-    Maasha::Biopieces::close_stream( $in );
-    Maasha::Biopieces::close_stream( $out );
-
-    $run_time_end = Maasha::Biopieces::run_time();
-
-    Maasha::Biopieces::run_time_print( $run_time_beg, $run_time_end, $options );
+    Maasha::Biopieces::status_log();
 }