X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fusearch_seq;h=9bd3d46469b5fb9aacd910356a4e6335c0d83464;hb=8c572d5e8bf807c65a7b08383dab3b644aa14842;hp=5cac9497b637fc95a1d9c4e6fd7d8e68fe9da2ba;hpb=0fe46f5571c01ba067b852441e7b57f931bed7f1;p=biopieces.git

diff --git a/bp_bin/usearch_seq b/bp_bin/usearch_seq
index 5cac949..9bd3d46 100755
--- a/bp_bin/usearch_seq
+++ b/bp_bin/usearch_seq
@@ -82,7 +82,7 @@ class Usearch
 	# The command is composed of bits from the @command variable.
 	def execute
 		@command.unshift "nice -n 19"
-    @command << "--rev" if @options[:comp]
+    @command << "--rev"
 		@command << "> /dev/null 2>&1" unless @options[:verbose]
 		command = @command.join(" ")
     system(command)
@@ -94,7 +94,6 @@ end
 
 casts = []
 casts << {:long=>'database', :short=>'d', :type=>'file!', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
-casts << {:long=>'comp',     :short=>'c', :type=>'flag',  :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
 casts << {:long=>'identity', :short=>'i', :type=>'float', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}
 casts << {:long=>'e_val',    :short=>'e', :type=>'float', :mandatory=>false, :default=>nil, :allowed=>nil, :disallowed=>nil}