X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fshuffle_seq;h=009a785e4d728e2fb83daef080ebac44836a6a21;hb=5a9b7c80e4e4428e404575ed3c0290cde15a7402;hp=11d4c91312ae0cf1de7933d4da274e94c39995fe;hpb=5aed4676ad1bf35abbade6215ac90ee591e6d8fe;p=biopieces.git

diff --git a/bp_bin/shuffle_seq b/bp_bin/shuffle_seq
index 11d4c91..009a785 100755
--- a/bp_bin/shuffle_seq
+++ b/bp_bin/shuffle_seq
@@ -26,6 +26,7 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
+use warnings;
 use strict;
 use Maasha::Biopieces;
 use Maasha::Seq;
@@ -43,7 +44,8 @@ $out = Maasha::Biopieces::write_stream( $options->{ "stream_out" } );
 
 while ( $record = Maasha::Biopieces::get_record( $in ) )
 {
-    $record->{ "SEQ" } = Maasha::Seq::seq_shuffle( $record->{ "SEQ" } ) if $record->{ "SEQ" };
+    $record->{ "SEQ" }    = Maasha::Seq::seq_shuffle( $record->{ "SEQ" } )    if $record->{ "SEQ" };
+    # $record->{ "SCORES" } = Maasha::Seq::seq_shuffle( $record->{ "SCORES" } ) if $record->{ "SCORES" }; # Hackery thing
 
     Maasha::Biopieces::put_record( $record, $out );
 }