X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fshuffle_records;h=ae62a3108df6cf913cf116ac5598d6b2787598cc;hb=f2b18307294690cf1376b51357469910b509e695;hp=194cab0b8815e2e600a3ebc907af4ee928efb0e4;hpb=494dc53ebd515b1e3e9b91bbebf43059899ca4ce;p=biopieces.git

diff --git a/bp_bin/shuffle_records b/bp_bin/shuffle_records
index 194cab0..ae62a31 100755
--- a/bp_bin/shuffle_records
+++ b/bp_bin/shuffle_records
@@ -31,20 +31,18 @@
 
 require 'maasha/biopieces'
 
-casts = []
-
-bp = Biopieces.new
-
-options = bp.parse(ARGV, casts)
+options = Biopieces.options_parse(ARGV)
 
 records = []
 
-bp.each_record do |record|
-  records << record
-end
+Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
+  input.each_record do |record|
+    records << record
+  end
 
-records.shuffle.each do |record|
-  bp.puts record
+  records.shuffle.each do |record|
+    output.puts record
+  end
 end