X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fremove_indels;h=9a1ad033a0fbe508f4f12891ba06885179040814;hb=af282a65d141826c15944437b07a0353dd14e79c;hp=59bbd4f92b932073a7fdaecd211d410712e18f7e;hpb=5aed4676ad1bf35abbade6215ac90ee591e6d8fe;p=biopieces.git

diff --git a/bp_bin/remove_indels b/bp_bin/remove_indels
index 59bbd4f..9a1ad03 100755
--- a/bp_bin/remove_indels
+++ b/bp_bin/remove_indels
@@ -26,6 +26,7 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
+use warnings;
 use strict;
 use Maasha::Biopieces;
 
@@ -42,7 +43,8 @@ $out = Maasha::Biopieces::write_stream( $options->{ "stream_out" } );
 
 while ( $record = Maasha::Biopieces::get_record( $in ) ) 
 {
-    $record->{ 'SEQ' } =~ tr/-~.//d if $record->{ "SEQ" };
+    $record->{ 'SEQ' }     =~ tr/-~.//d if $record->{ "SEQ" };
+    $record->{ 'SEQ_LEN' } = length $record->{ "SEQ" };
 
     Maasha::Biopieces::put_record( $record, $out );
 }