X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fremove_adaptor;h=c709b4f1cd11d2fd13814885adeb416eba12c3dd;hb=48bea5c28b89dc5586d0bddb338ccd6ba23aa1f9;hp=3edf3ac4fa749eabe34fff8d643a5f57f1a7f209;hpb=5487798582369ff097f489d3f65b1baa5766b17c;p=biopieces.git

diff --git a/bp_bin/remove_adaptor b/bp_bin/remove_adaptor
index 3edf3ac..c709b4f 100755
--- a/bp_bin/remove_adaptor
+++ b/bp_bin/remove_adaptor
@@ -78,13 +78,13 @@ while ( $record = Maasha::Biopieces::get_record( $in ) )
             if ( $options->{ "remove" } eq "after" )
             {
                 $record->{ "SEQ" }     = substr $record->{ "SEQ" },    0, $pos;
-                $record->{ "SCORES" }  = substr $record->{ "SCORES" }, 0, $pos;
+                $record->{ "SCORES" }  = substr $record->{ "SCORES" }, 0, $pos if $record->{ "SCORES" };
                 $record->{ "SEQ_LEN" } = $pos;
             }
             else
             {
                 $record->{ "SEQ" }     = substr $record->{ "SEQ" },    $pos + $adaptor_len;
-                $record->{ "SCORES" }  = substr $record->{ "SCORES" }, $pos + $adaptor_len;
+                $record->{ "SCORES" }  = substr $record->{ "SCORES" }, $pos + $adaptor_len if $record->{ "SCORES" };
                 $record->{ "SEQ_LEN" } = length $record->{ "SEQ" };
             }
         }