X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fread_sff;h=1410af6cddf34d225f99ba0bd3a25cb85d085568;hb=5de6112b70b59420b245ce636a8b2e3c90acbe00;hp=3de8b2ea1afea9e5a7e9213eac4913e8b7a01f01;hpb=c4f14c511655d92281b6d70363de57b77a9b6045;p=biopieces.git diff --git a/bp_bin/read_sff b/bp_bin/read_sff index 3de8b2e..1410af6 100755 --- a/bp_bin/read_sff +++ b/bp_bin/read_sff @@ -47,16 +47,16 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output| num = 0 last = false - if options.has_key? :data_in + if options[:data_in] options[:data_in].each do |file| - SFF.open(file, mode='r') do |sff| + SFF.open(file, 'r') do |sff| sff.each do |entry| entry.mask if options[:mask] entry.clip if options[:clip] output.puts entry.to_bp num += 1 - if options.has_key? :num and options[:num] == num + if options[:num] and options[:num] == num last = true break end