X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fread_kiss;h=04a93886b4c3544607e4349d125aac9f39216b44;hb=5de6112b70b59420b245ce636a8b2e3c90acbe00;hp=043f08a54129c8b1015b5a6e32ba278ccf857ae2;hpb=e481c33c8674058258da9b5f2ff9165a78d6c65a;p=biopieces.git diff --git a/bp_bin/read_kiss b/bp_bin/read_kiss index 043f08a..04a9388 100755 --- a/bp_bin/read_kiss +++ b/bp_bin/read_kiss @@ -21,7 +21,7 @@ # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> DESCRIPTION <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< -# Read FASTA entries from one or more files. +# Read KISS entries from one or more files. # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< @@ -30,7 +30,7 @@ use warnings; use strict; use Maasha::Biopieces; use Maasha::Filesys; -use Maasha::KISS::IO; +use Maasha::KISS; # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<< @@ -58,9 +58,9 @@ if ( $options->{ 'data_in' } ) $num = 1; - while ( $entry = Maasha::KISS::IO::kiss_entry_get( $data_in ) ) + while ( $entry = Maasha::KISS::kiss_entry_get( $data_in ) ) { - if ( $record = Maasha::KISS::IO::kiss2biopiece( $entry ) ) { + if ( $record = Maasha::KISS::kiss2biopiece( $entry ) ) { Maasha::Biopieces::put_record( $record, $out ); }