X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Flist_biopieces;h=1223bd6cb134acfadfb1e48851c48bc873ba35d5;hb=9ff3f4f82dedb5ccaa924fe311486bad3ed1248d;hp=cb718144dbeffac42bb57deca39f11b602860c2b;hpb=f7e5c1b54c562cc1b25fe419cacd4da9ac01f129;p=biopieces.git

diff --git a/bp_bin/list_biopieces b/bp_bin/list_biopieces
deleted file mode 120000
index cb71814..0000000
--- a/bp_bin/list_biopieces
+++ /dev/null
@@ -1 +0,0 @@
-../code_perl/Maasha/bin/list_biopieces
\ No newline at end of file
diff --git a/bp_bin/list_biopieces b/bp_bin/list_biopieces
new file mode 100755
index 0000000..1223bd6
--- /dev/null
+++ b/bp_bin/list_biopieces
@@ -0,0 +1,79 @@
+#!/usr/bin/env perl
+
+# Copyright (C) 2007-2009 Martin A. Hansen.
+
+# This program is free software; you can redistribute it and/or
+# modify it under the terms of the GNU General Public License
+# as published by the Free Software Foundation; either version 2
+# of the License, or (at your option) any later version.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, write to the Free Software
+# Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
+
+# http://www.gnu.org/copyleft/gpl.html
+
+
+# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>> DESCRIPTION <<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+
+# Print summary for all Biopices.
+
+# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+
+
+use warnings;
+use strict;
+use Maasha::Common;
+use Maasha::Biopieces;
+use Maasha::Gwiki;
+
+
+# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+
+
+my ( $options, @files, $file, $wiki, $program, $summary );
+
+$options = Maasha::Biopieces::parse_options();
+
+@files = Maasha::Filesys::ls_files( "$ENV{ 'BP_DIR' }/bp_usage" );
+
+foreach $file ( sort @files )
+{
+    if ( $file =~ /\/([BGa-z0-9_]+)\.wiki$/ )
+    {
+        $program = $1;
+
+        $wiki = Maasha::Gwiki::gwiki_read( $file );
+
+        $summary = $wiki->[ 0 ]->[ 0 ]->{ 'TEXT' };
+        $summary =~ s/^#summary\s+//;
+
+        printf( "%-30s%s\n", $program, $summary );
+    }
+}
+
+
+# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+
+
+BEGIN
+{
+    Maasha::Biopieces::status_set();
+}
+
+
+END
+{
+    Maasha::Biopieces::status_log();
+}
+
+
+# >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
+
+
+__END__