X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Flength_seq;h=04384db3660c7762ccb1b99f9500d8a2e4bd3dc5;hb=48bea5c28b89dc5586d0bddb338ccd6ba23aa1f9;hp=0152ef497846afe930c11f4c7a32aeb44aa41efe;hpb=494dc53ebd515b1e3e9b91bbebf43059899ca4ce;p=biopieces.git

diff --git a/bp_bin/length_seq b/bp_bin/length_seq
index 0152ef4..04384db 100755
--- a/bp_bin/length_seq
+++ b/bp_bin/length_seq
@@ -33,13 +33,13 @@ require 'maasha/biopieces'
 
 casts = []
 
-bp = Biopieces.new
+options = Biopieces.options_parse(ARGV, casts)
 
-options = bp.parse(ARGV, casts)
-
-bp.each_record do |record|
-  record[:SEQ_LEN] = record[:SEQ].length if record.has_key? :SEQ
-  bp.puts record
+Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
+  input.each_record do |record|
+    record[:SEQ_LEN] = record[:SEQ].length if record[:SEQ]
+    output.puts record
+  end
 end