X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Ffold_seq;h=4543920c2f749484ac3dddcd7311a677075780d4;hb=5de6112b70b59420b245ce636a8b2e3c90acbe00;hp=656310748412d6c037c2e91ad0e2c6479e065de4;hpb=5aed4676ad1bf35abbade6215ac90ee591e6d8fe;p=biopieces.git

diff --git a/bp_bin/fold_seq b/bp_bin/fold_seq
index 6563107..4543920 100755
--- a/bp_bin/fold_seq
+++ b/bp_bin/fold_seq
@@ -26,6 +26,7 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
+use warnings;
 use strict;
 use Maasha::Biopieces;
 
@@ -44,11 +45,9 @@ while ( $record = Maasha::Biopieces::get_record( $in ) )
 {
     if ( $record->{ "SEQ" } )
     {
-        if ( not $type ) {
-            $type = Maasha::Seq::seq_guess_type( $record->{ "SEQ" } );
-        }
+        $type = Maasha::Seq::seq_guess_type( $record->{ "SEQ" } ) if not $type;
         
-        if ( $type ne "protein" )
+        if ( $type ne "PROTEIN" )
         {
             ( $struct, $index ) = Maasha::Seq::fold_struct_rnafold( $record->{ "SEQ" } );
             $record->{ "SEC_STRUCT" }  = $struct;