X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Ffindsim_seq;h=edfe980f5cb1e63c8bbef2851bdbd4a41baa302b;hb=5de6112b70b59420b245ce636a8b2e3c90acbe00;hp=5622cec8b0a6d0d129546843bbf3aecf8cd169cd;hpb=aaaca4f941716d8c2d54ecfebd493ecc23d954af;p=biopieces.git

diff --git a/bp_bin/findsim_seq b/bp_bin/findsim_seq
index 5622cec..edfe980 100755
--- a/bp_bin/findsim_seq
+++ b/bp_bin/findsim_seq
@@ -38,8 +38,8 @@ casts << {:long=>'database',      :short=>'d', :type=>'file!', :mandatory=>true,
 casts << {:long=>'kmer',          :short=>'k', :type=>'uint',  :mandatory=>false, :default=>8,   :allowed=>"4,5,6,7,8,9", :disallowed=>nil}
 casts << {:long=>'step',          :short=>'s', :type=>'uint',  :mandatory=>false, :default=>1,   :allowed=>nil,           :disallowed=>"0"}
 casts << {:long=>'min_score',     :short=>'m', :type=>'float', :mandatory=>false, :default=>0.5, :allowed=>nil,           :disallowed=>nil}
-casts << {:long=>'max_hits',      :short=>'h', :type=>'uint',  :mandatory=>false, :default=>7,   :allowed=>nil,           :disallowed=>"0"}
-casts << {:long=>'max_diversity', :short=>'h', :type=>'uint',  :mandatory=>false, :default=>5,   :allowed=>nil,           :disallowed=>nil}
+casts << {:long=>'max_hits',      :short=>'h', :type=>'uint',  :mandatory=>false, :default=>20,  :allowed=>nil,           :disallowed=>"0"}
+casts << {:long=>'max_diversity', :short=>'M', :type=>'float', :mandatory=>false, :default=>nil, :allowed=>nil,           :disallowed=>nil}
 casts << {:long=>'query_ids',     :short=>'Q', :type=>'flag',  :mandatory=>false, :default=>nil, :allowed=>nil,           :disallowed=>nil}
 casts << {:long=>'subject_ids',   :short=>'S', :type=>'flag',  :mandatory=>false, :default=>nil, :allowed=>nil,           :disallowed=>nil}
 casts << {:long=>'realign',       :short=>'r', :type=>'flag',  :mandatory=>false, :default=>nil, :allowed=>nil,           :disallowed=>nil}