X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Ffind_adaptor;h=f2f593d1ce90f11087b04ca9d2abc8a58a40b264;hb=a945a21356f87f679f433279e502676f425ac8ee;hp=ac3681a090c8e80c6139a4d1640ce4dd97664430;hpb=b982cc677363d7458963b610ec53bf2c4f7476a9;p=biopieces.git

diff --git a/bp_bin/find_adaptor b/bp_bin/find_adaptor
index ac3681a..f2f593d 100755
--- a/bp_bin/find_adaptor
+++ b/bp_bin/find_adaptor
@@ -53,11 +53,11 @@ casts << {:long=>'deletions',   :short=>'d', :type=>'uint',   :mandatory=>false,
 options = Biopieces.options_parse(ARGV, casts)
 
 if options[:forward_rc]
-  options[:forward] = Seq.new("test", options[:forward_rc], 'dna').reverse.complement.seq
+  options[:forward] = Seq.new("test", options[:forward_rc], :dna).reverse.complement.seq
 end
 
 if options[:reverse_rc]
-  options[:reverse] = Seq.new("test", options[:reverse_rc], 'dna').reverse.complement.seq
+  options[:reverse] = Seq.new("test", options[:reverse_rc], :dna).reverse.complement.seq
 end
 
 raise ArgumentError, "no adaptor specified" unless options[:forward] or options[:reverse]