X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fcreate_weight_matrix;h=ac7d12c4baa5936f41f3ae90dbb0cbc108625fc7;hb=5de6112b70b59420b245ce636a8b2e3c90acbe00;hp=44a211c2d180faaa1b0712c5feb6419f98c54777;hpb=feaa3fbccdc23c3bf35c5a9861cede0f69a6b62f;p=biopieces.git

diff --git a/bp_bin/create_weight_matrix b/bp_bin/create_weight_matrix
index 44a211c..ac7d12c 100755
--- a/bp_bin/create_weight_matrix
+++ b/bp_bin/create_weight_matrix
@@ -1,4 +1,4 @@
-#!/usr/bin/env perl -w
+#!/usr/bin/env perl
 
 # Copyright (C) 2007-2009 Martin A. Hansen.
 
@@ -26,6 +26,7 @@
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
+use warnings;
 use strict;
 use Maasha::Common;
 use Maasha::Biopieces;
@@ -34,7 +35,7 @@ use Maasha::Biopieces;
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
-my ( $run_time_beg, $run_time_end, $options, $in, $out, $record, $count, $i, $res, %freq_hash, %res_hash, $freq );
+my ( $options, $in, $out, $record, $count, $i, $res, %freq_hash, %res_hash, $freq );
 
 $options = Maasha::Biopieces::parse_options(
     [
@@ -87,25 +88,22 @@ foreach $res ( sort keys %res_hash )
     Maasha::Biopieces::put_record( $record, $out );
 }
 
+Maasha::Biopieces::close_stream( $in );
+Maasha::Biopieces::close_stream( $out );
+
 
 # >>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>><<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<
 
 
 BEGIN
 {
-    $run_time_beg = Maasha::Biopieces::run_time();
-
-    Maasha::Biopieces::log_biopiece();
+    Maasha::Biopieces::status_set();
 }
 
+
 END
 {
-    Maasha::Biopieces::close_stream( $in );
-    Maasha::Biopieces::close_stream( $out );
-
-    $run_time_end = Maasha::Biopieces::run_time();
-
-    Maasha::Biopieces::run_time_print( $run_time_beg, $run_time_end, $options );
+    Maasha::Biopieces::status_log();
 }