X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fassemble_seq_ray;h=fbef82aedd72fba3bc268adaba38fba6eed4eaa0;hb=d83e1ce27879cdb71a8cad530e138d96214619ae;hp=441fb507ede8c228fbcad32c6ff242504926a538;hpb=c7335fcf6000fb34574c7c7def841b67e923b508;p=biopieces.git

diff --git a/bp_bin/assemble_seq_ray b/bp_bin/assemble_seq_ray
index 441fb50..fbef82a 100755
--- a/bp_bin/assemble_seq_ray
+++ b/bp_bin/assemble_seq_ray
@@ -141,7 +141,11 @@ file_fasta = File.join(options[:directory], "sequence_in.fasta")
 Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
 	Fasta.open(file_fasta, mode="w") do |fasta_io|
 		input.each_record do |record|
-			fasta_io.puts record
+      if record[:SEQ_NAME] and record[:SEQ]
+        seq = Seq.new_bp(record)
+
+			  fasta_io.puts seq.to_fasta
+      end
 		end
 	end