X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fassemble_pairs2;h=f6d2f28594056689190bbb5e34d66ae183132836;hb=dd65a9e6c523ee61c85ff0bfe00eaf1cc80be4c6;hp=bd3c7fac3e18792c55762200804f1bc84ce3bdd4;hpb=d83e1ce27879cdb71a8cad530e138d96214619ae;p=biopieces.git

diff --git a/bp_bin/assemble_pairs2 b/bp_bin/assemble_pairs2
index bd3c7fa..f6d2f28 100755
--- a/bp_bin/assemble_pairs2
+++ b/bp_bin/assemble_pairs2
@@ -64,11 +64,22 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
           overlap_max:options[:overlap_max]
         )
 
-        output.puts merged.to_bp if merged
+        if merged
+          new_record = merged.to_bp
+
+          if merged.seq_name =~ /overlap=(\d+):hamming=(\d+)$/
+            new_record[:OVERLAP]      = $1
+            new_record[:HAMMING_DIST] = $2
+          end
+
+          output.puts new_record
+        end
 
         entry1 = nil
         entry2 = nil
       end
+    else
+      output.puts record
     end
   end
 end