X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fassemble_pairs2;h=611ca56609c63b236722ded3769725f94675e8e2;hb=94c5176532db69ab360414e082111f1d8e47a925;hp=c7bfe1bc7007dbca8cd24c98d8c434b554585882;hpb=b80cf7b1b2e4f2b1afd992b2821ac071ee0f2c79;p=biopieces.git

diff --git a/bp_bin/assemble_pairs2 b/bp_bin/assemble_pairs2
index c7bfe1b..611ca56 100755
--- a/bp_bin/assemble_pairs2
+++ b/bp_bin/assemble_pairs2
@@ -51,14 +51,15 @@ Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
         entry1 = Seq.new_bp(record)
       elsif entry2.nil?
         entry2 = Seq.new_bp(record)
-        entry2.type = :dna
-        entry2.reverse!.complement!
       end
 
       if entry1 and
          entry2 and
          entry1.length >= options[:overlap_min] and
          entry2.length >= options[:overlap_min]
+        entry2.type = :dna
+        entry2.reverse!.complement!
+
         merged = Assemble.pair(
           entry1,
           entry2,