X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fanalyze_assembly;h=614a9e54d8e85bc00e84e2a6deab96049c0ddb5d;hb=2f0fd91b461033529a4a72e161bd133252a22eb6;hp=3b9748db523c20c412ea21e52edd9c206402b25b;hpb=d90521fe9b7bf51683eb4722bd223e143a53270b;p=biopieces.git

diff --git a/bp_bin/analyze_assembly b/bp_bin/analyze_assembly
index 3b9748d..614a9e5 100755
--- a/bp_bin/analyze_assembly
+++ b/bp_bin/analyze_assembly
@@ -50,10 +50,10 @@ tmpdir  = Biopieces.mktmpdir
 infile  = File.join(tmpdir, "in.fna")
 outfile = File.join(tmpdir, "out.prodigal")
 
-Fasta.open(infile, mode="w") do |fasta_output|
+Fasta.open(infile, "w") do |fasta_output|
   Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
     input.each_record do |record|
-      if record.has_key? :SEQ
+      if record[:SEQ]
         seq = Seq.new_bp(record)
 
         total   += record[:SEQ].length