X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Fanalyze_assembly;h=3b9748db523c20c412ea21e52edd9c206402b25b;hb=44f810b56c353bfe302469a8313b0aada285b27e;hp=7fe7bd69dee9d09b1347cd66ebda462a81d9e448;hpb=c4f14c511655d92281b6d70363de57b77a9b6045;p=biopieces.git

diff --git a/bp_bin/analyze_assembly b/bp_bin/analyze_assembly
index 7fe7bd6..3b9748d 100755
--- a/bp_bin/analyze_assembly
+++ b/bp_bin/analyze_assembly
@@ -54,12 +54,14 @@ Fasta.open(infile, mode="w") do |fasta_output|
   Biopieces.open(options[:stream_in], options[:stream_out]) do |input, output|
     input.each_record do |record|
       if record.has_key? :SEQ
+        seq = Seq.new_bp(record)
+
         total   += record[:SEQ].length
         lengths << record[:SEQ].length
       end
 
       output.puts record unless options[:no_stream]
-      fasta_output.puts record
+      fasta_output.puts seq.to_fasta
     end
   end
 end