X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2Falign_seq;h=632d732f21fe47bcdc054061bcc210f9fbdae8fe;hb=fe96759f8f0cbc43b1b6965ee638c5415ef48c48;hp=af114e1da2d78e1490cbf016fc10ab89a4656fe1;hpb=9bf550c4335d8860c5f6f9c4db0f385f1b36c1dd;p=biopieces.git

diff --git a/bp_bin/align_seq b/bp_bin/align_seq
index af114e1..632d732 100755
--- a/bp_bin/align_seq
+++ b/bp_bin/align_seq
@@ -49,7 +49,7 @@ $out = Maasha::Biopieces::write_stream( $options->{ "stream_out" } );
 
 while ( $record = Maasha::Biopieces::get_record( $in ) ) 
 {
-    if ( $record->{ "SEQ_NAME" } and $record->{ "SEQ" } ) {
+    if ( $record->{ "SEQ_NAME" } and $record->{ "SEQ" } ) {  # TODO use biopieces2fasta() instead
         push @entries, [ $record->{ "SEQ_NAME" }, $record->{ "SEQ" } ];
     } elsif ( $record->{ "Q_ID" } and $record->{ "SEQ" } ) {
         push @entries, [ $record->{ "Q_ID" }, $record->{ "SEQ" } ];