X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2FBGB_upload;h=0d5415cc74632cc751b97d138d4359e99234d247;hb=af576f0bbbb660f3943d72e7b67fe1d77c76f706;hp=db707a927e92ce3480db1cbead931cd6f400f187;hpb=de5abed9d513e5d51e7bf6f1ee9feea48dac4ec9;p=biopieces.git diff --git a/bp_bin/BGB_upload b/bp_bin/BGB_upload index db707a9..0d5415c 100755 --- a/bp_bin/BGB_upload +++ b/bp_bin/BGB_upload @@ -33,7 +33,7 @@ use Maasha::Common; use Maasha::KISS; use Maasha::Biopieces; use Maasha::Fasta; -use Maasha::BGB::Common; +use Maasha::BGB::Track; use Maasha::BGB::Wiggle; use Maasha::Filesys; @@ -97,7 +97,7 @@ if ( $options->{ 'track_name' } ) Maasha::Biopieces::put_record( $record, $out ) if not $options->{ "no_stream" }; } - $num = Maasha::BGB::Common::max_track( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' } ); + $num = Maasha::BGB::Track::max_track( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' } ); $num = sprintf( "%04d", $num + 10 ); foreach $key ( keys %fh_hash ) @@ -116,7 +116,6 @@ if ( $options->{ 'track_name' } ) Maasha::Filesys::file_copy( "$tmp_dir/$key", "$dst_dir/track_data.kiss" ); Maasha::KISS::kiss_sort( "$dst_dir/track_data.kiss" ); - Maasha::KISS::kiss_index( "$dst_dir/track_data.kiss" ); } elsif ( $options->{ 'track_type' } eq 'wiggle' ) {