X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bp_bin%2FBGB_read_track;h=979a8aaba83a1ac1f4ca27cd1254a3684f41bd3e;hb=48bea5c28b89dc5586d0bddb338ccd6ba23aa1f9;hp=ec468e17e70482c8651968fb544ba0a554bccfbf;hpb=ebbe2bae7f84efe52233f8c5cca06f4e71678eea;p=biopieces.git diff --git a/bp_bin/BGB_read_track b/bp_bin/BGB_read_track index ec468e1..979a8aa 100755 --- a/bp_bin/BGB_read_track +++ b/bp_bin/BGB_read_track @@ -30,7 +30,7 @@ use warnings; use strict; use Data::Dumper; use Maasha::Biopieces; -use Maasha::BGB::Common; +use Maasha::BGB::Track; use Maasha::KISS; @@ -59,13 +59,13 @@ while ( $record = Maasha::Biopieces::get_record( $in ) ) Maasha::Biopieces::put_record( $record, $out ); } -Maasha::Common::error( qq(Bad user: "$options->{ 'user' }") ) if not grep /^$options->{ 'user' }$/, Maasha::BGB::Common::list_users(); +Maasha::Common::error( qq(Bad user: "$options->{ 'user' }") ) if not grep /^$options->{ 'user' }$/, Maasha::BGB::Track::list_users(); -@contigs = Maasha::BGB::Common::list_contigs( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' } ); +@contigs = Maasha::BGB::Track::list_contigs( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' } ); foreach $contig ( @contigs ) { - @tracks = Maasha::BGB::Common::list_track_dir( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' }, $contig ); + @tracks = Maasha::BGB::Track::list_track_dir( $options->{ 'user' }, $options->{ 'clade' }, $options->{ 'genome' }, $options->{ 'assembly' }, $contig ); foreach $track ( @tracks ) {