X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bootstrapsharedcommand.h;h=be4a7648825ba541a253daa74817b120ed087f57;hb=4745a956b3116a719f52f341d2a2db84df4817da;hp=cf68e00b42b3e3eb2db96ae4d7e1bb23b3d22096;hpb=92dde9a6d6c638fcbbd5dbaa5c79167564f90e49;p=mothur.git

diff --git a/bootstrapsharedcommand.h b/bootstrapsharedcommand.h
index cf68e00..be4a764 100644
--- a/bootstrapsharedcommand.h
+++ b/bootstrapsharedcommand.h
@@ -32,9 +32,9 @@ public:
 	void help();
 	
 private:
-	void createTree(ostream*, Tree*);
+	int createTree(ostream*, Tree*);
 	void printSims();
-	void process(SharedOrderVector*);
+	int process(SharedOrderVector*);
 	
 	
 	GlobalData* globaldata;
@@ -55,11 +55,10 @@ private:
 	vector<SharedRAbundVector*> lookup;
 
 	bool abort, allLines;
-	set<int> lines; //hold lines to be used
 	set<string> labels; //holds labels to be used
-	string outputFile, calc, groups, line, label;
+	string outputFile, calc, groups, label, outputDir;
 	int numGroups, iters;
-	vector<string>  Estimators, Groups; //holds estimators to be used
+	vector<string>  Estimators, Groups, outputNames; //holds estimators to be used
 
 };