X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=bootstrapsharedcommand.cpp;h=afc3cf1533475b6bf78b8127ba34086193612371;hb=a4f05f09c250323132a4b9427f41a3ededaec634;hp=66a43976c8c5b6ca61090f78a216acfae99d694f;hpb=c69e2e9749626cfbf1d6cb0125ae94f869e00b18;p=mothur.git

diff --git a/bootstrapsharedcommand.cpp b/bootstrapsharedcommand.cpp
index 66a4397..afc3cf1 100644
--- a/bootstrapsharedcommand.cpp
+++ b/bootstrapsharedcommand.cpp
@@ -340,6 +340,13 @@ int BootSharedCommand::execute(){
 		//reset groups parameter
 		globaldata->Groups.clear();  
 		
+		//set first tree file as new current treefile
+		string currentTree = "";
+		itTypes = outputTypes.find("tree");
+		if (itTypes != outputTypes.end()) {
+			if ((itTypes->second).size() != 0) { currentTree = (itTypes->second)[0]; m->setTreeFile(currentTree); }
+		}
+		
 		m->mothurOutEndLine();
 		m->mothurOut("Output File Names: "); m->mothurOutEndLine();
 		for (int i = 0; i < outputNames.size(); i++) {	m->mothurOut(outputNames[i]); m->mothurOutEndLine();	}