X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastdb.hpp;h=e2f4f57180560ae287c644a527553abde89e45e6;hb=8dd3c225255d7084e3aff8740aa4f1f1cabb367a;hp=99a99879f427efd0ea068f125bbf8b1cd003e95e;hpb=4e4d3cb3315fe25b40383c6f65cd6be23f58903d;p=mothur.git

diff --git a/blastdb.hpp b/blastdb.hpp
index 99a9987..e2f4f57 100644
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -16,8 +16,10 @@
 class BlastDB : public Database {
 
 public:
-	BlastDB(string, float, float, float, float, string);
-	BlastDB(string);
+	BlastDB(string, float, float, float, float, string, int);
+	BlastDB(string, int);
+	BlastDB(const BlastDB& bdb) : dbFileName(bdb.dbFileName), queryFileName(bdb.queryFileName), blastFileName(bdb.blastFileName), path(bdb.path),
+									count(bdb.count), gapOpen(bdb.gapOpen), gapExtend(bdb.gapExtend), match(bdb.match), misMatch(bdb.misMatch), Database(bdb) {}
 	~BlastDB();
 	
 	void generateDB();
@@ -26,12 +28,15 @@ public:
 	vector<int> findClosestMegaBlast(Sequence*, int, int);
 	
 private:
+	
+	string scrubName(string);
+	
 	string dbFileName;
 	string queryFileName;
 	string blastFileName;
 	string path;
 	
-	int count;
+	int count, threadID;
 	float gapOpen;
 	float gapExtend;
 	float match;