X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastdb.hpp;h=9b8965d017b69a8f8cf27884261ea1095f77e176;hb=1cf188b912d6da8f2cd03dd71cecef664a699c1a;hp=d61aaecb5e0712b47458e000416b881719cc7e65;hpb=fdc1f6eaf544f695fc1511f24bddd7e6069c33ba;p=mothur.git

diff --git a/blastdb.hpp b/blastdb.hpp
index d61aaec..9b8965d 100644
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -12,7 +12,6 @@
  */
 
 #include "mothur.h"
-#include "globaldata.hpp"
 
 class BlastDB : public Database {
 
@@ -24,12 +23,7 @@ public:
 	void generateDB();
 	void addSequence(Sequence);
 	vector<int> findClosestSequences(Sequence*, int);
-	vector<int> findClosestMegaBlast(Sequence*, int);
-	
-	#ifdef USE_MPI	
-	int MPISend(int); //just sends gapOpen, gapExtend, match and mismatch
-	int MPIRecv(int);
-	#endif
+	vector<int> findClosestMegaBlast(Sequence*, int, int);
 	
 private:
 	string dbFileName;
@@ -42,7 +36,7 @@ private:
 	float gapExtend;
 	float match;
 	float misMatch;
-	GlobalData* globaldata;
+	
 };
 
 #endif