X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastdb.hpp;h=50a8379b68ec89130b7df1892aab4538daa77a1e;hb=372fb21ea66ced432b109225851a1b80ef0491a3;hp=c718bb43fb29562b755cdd44e37fa893c7b57f25;hpb=63e089e0b3aad1741bab60119ed7ccc784dce347;p=mothur.git

diff --git a/blastdb.hpp b/blastdb.hpp
index c718bb4..50a8379 100644
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -12,30 +12,34 @@
  */
 
 #include "mothur.h"
-#include "globaldata.hpp"
 
 class BlastDB : public Database {
 
 public:
-	BlastDB(float, float, float, float);
+	BlastDB(string, float, float, float, float, string, int);
+	BlastDB(string, int);
 	~BlastDB();
 	
 	void generateDB();
 	void addSequence(Sequence);
 	vector<int> findClosestSequences(Sequence*, int);
-
+	vector<int> findClosestMegaBlast(Sequence*, int, int);
+	
 private:
+	
+	string scrubName(string);
+	
 	string dbFileName;
 	string queryFileName;
 	string blastFileName;
 	string path;
 	
-	int count;
+	int count, threadID;
 	float gapOpen;
 	float gapExtend;
 	float match;
 	float misMatch;
-	GlobalData* globaldata;
+	
 };
 
 #endif