X-Git-Url: https://git.donarmstrong.com/?a=blobdiff_plain;f=blastdb.hpp;h=50a8379b68ec89130b7df1892aab4538daa77a1e;hb=372fb21ea66ced432b109225851a1b80ef0491a3;hp=0c3ac4b4ef1d7c49e98d3b79d5b2e40f1a1fe9bb;hpb=d3aed959ca3b68890eeb7b815e24210bcfeb256c;p=mothur.git

diff --git a/blastdb.hpp b/blastdb.hpp
index 0c3ac4b..50a8379 100644
--- a/blastdb.hpp
+++ b/blastdb.hpp
@@ -16,10 +16,8 @@
 class BlastDB : public Database {
 
 public:
-	BlastDB(string, float, float, float, float, string);
-	BlastDB(string);
-	BlastDB(const BlastDB& bdb) : dbFileName(bdb.dbFileName), queryFileName(bdb.queryFileName), blastFileName(bdb.blastFileName), path(bdb.path),
-									count(bdb.count), gapOpen(bdb.gapOpen), gapExtend(bdb.gapExtend), match(bdb.match), misMatch(bdb.misMatch), Database(bdb) {}
+	BlastDB(string, float, float, float, float, string, int);
+	BlastDB(string, int);
 	~BlastDB();
 	
 	void generateDB();
@@ -28,12 +26,15 @@ public:
 	vector<int> findClosestMegaBlast(Sequence*, int, int);
 	
 private:
+	
+	string scrubName(string);
+	
 	string dbFileName;
 	string queryFileName;
 	string blastFileName;
 	string path;
 	
-	int count;
+	int count, threadID;
 	float gapOpen;
 	float gapExtend;
 	float match;